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The purpose of this study is to outline the improvement of framing in Indonesia science and technology policy content, policy formulation model, policy strategy implementation and policy performance indicators.

This study is conducted by implementing action research model to generate new knowledge as a research interest, through the search for solutions or improvements to problematical situation, applying Soft Systems Methodology. Thus, this research model is regarded as Soft Systems Methodology-based Action Research (SSM-based AR).

Policy formulation is not evidence based in which policy documents remain theoretical and are impractical or not detailed in engaging real conditions and strategic issues, yet the targets are measurable despite predictive results. Change and strengthening are required in the national science and technology policy for the next period, on the basis that future research policies are encouraged to address problems and solutions to build a country based on science and technology. Indonesia requires policies involving both effective and efficient national research; therefore, the need for an integrated policy direction conveying science and technology and other related sectors, such as the health sector and food, remains vital.

Previously, science and technology policy planning in Indonesia was not equipped with data and indicators of success, having no target to achieve within a five-year period. In the coming periods, science and technology policy documents in Indonesia are issued in the form of government regulations/presidential decrees, including indicators of science and technology achievements (quantitatively) for five years.

This paper aims to discuss the emergence of science, technology and innovation (STI) institutions in Indonesia during the Dutch East Indies colonial period in 1778–1941. The emergence of these institutions reflected the dynamics of science and technology development and innovation in that era.

This paper navigates a historiographical approach. Data collection techniques use “secondary data research,” with archival investigation published by official sources in the Dutch East Indies in the 18th and 19th centuries as well as other reference sources, and data analysis techniques use “supplementary analysis.”

This research indicates that the STI institution during the Dutch East Indies colonial period was formed to maximize the natural resources of the Dutch East Indies. The STI institution at that time was constructed as part of Buitenzorg’s Plantentuin the lands, plantations, solutions for health, astronomy, geology, forestry and culture.

The limitations of this research, as well as future research. Relying too much on “secondary data” is a limitation of this study. Therefore, it is necessary to collect primary data through in-depth interviews with historical scientists studying STIs in Indonesia in future research.

This study, to the best of the authors’ knowledge, considered the first study, reveals the dynamics of STI in Indonesia during the Dutch East Indies colonial era by examining the dynamics of the institution. In addition, this study succeeded in dividing five institutional STI clusters in the Dutch East Indies Colonial period 1778–1941, namely, units/institutions formed as part of Planuntungin te Buitenzorg; units/institutions formed based on plantations, initiated by private plantations to find solutions to the pests and diseases that attack their crops; units/institutions formed to seek solutions in the health sector; units/institutions formed based on astronomy, geology and forestry; and units/ institutions regarded as scientific councils/associations.

This paper aims to identify the strengths of the universities based on the research area which are prioritized by the Government of Indonesia in the National Medium Term Development Plan 2015–2019, in the research areas of food and agriculture; energy, new and renewable energy; health and medicine; transportation; telecommunication, information and communication; defense and security technologies and advanced materials.

The mapping of the research strength in Indonesian universities is performed by using data of the university research output in the Information System for Research and Community Service, Ministry of Research, Technology and Higher Education and categorized into seven categories, i.e. accredited national journals, international journals indexed by Scopus or others, Intellectual Property ownership, textbooks, prototypes and an appropriate technology. Based on the data obtained from Information System for Research and Community Service, there are 904 universities in Indonesia conducting research activities and generating 14,188 research outputs.

This paper analyzes 3 of the 9 National Research Priorities, namely, food, energy and health and medicine. The data show that there are 904 universities in Indonesia conducting research activities and producing 14,188 research results. The research strength index based on National Research Priorities shows that three universities have the highest cluster strength index. Gadjah Mada with an index value of 4.95 is the highest index in the food cluster. In the energy cluster of the Institut Teknologi Bandung with the highest index value of 0.63. Meanwhile, the Universitas Indonesia reached 2.06 as the highest index value in the health and medicine cluster.

Measurement of the strength of the study was conducted using data from research results from universities in 2016 which were recorded in the Information System for Research and Community Service. The University’s R&D strength is calculated from seven categories of research results: accredited national journals, international journals indexed by Scopus or others, intellectual property rights, textbooks, prototypes and appropriate technology products.